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Submissions from 2017

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Evolutionary Adaptations of Biofilms Infecting Cystic Fibrosis Lungs Promote Mechanical Toughness By Adjusting Polysaccharide Production, Kristin Kovach, Megan Davis-Fields, Yasuhiko Irie, Kanishk Jain, Shashvat Doorwar, Katherine Vuong, Numa Dhamani, Kishore Mohanty, Ahmed Touhami, and Vernita D. Gordon

Submissions from 2016

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Role of Multicellular Aggregates in Biofilm Formation, Kasper N. Kragh, Jaime B. Hutchison, Gavin Melaugh, Chris Rodesney, Aled E. L. Roberts, Yasuhiko Irie, Peter Ø. Jensen, Stephen P. Diggle, Rosalind J. Allen, Vernita Gordon, and Thomas Bjarnsholt

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Shaping the Growth Behaviour of Biofilms Initiated from Bacterial Aggregates, Gavin Melaugh, Jaime B. Hutchison, Kasper N. Kragh, Yasuhiko Irie, Aled E. L. Roberts, Thomas Bjarnsholt, Stephen P. Diggle, Vernita Gordon, and Rosalind J. Allen

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Alzheimer's Disease: The Silver Tsunami of the 21st Century, Ankita Sarkar, Madison Irwin, Aditi Singh, Matthew Riccetti, and Amit Singh

Submissions from 2015

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The Evolutionary Origination and Diversification of a Dimorphic Gene Regulatory Network through Parallel Innovations in cis and trans, Eric M. Camino, John C. Butts, Alison J. Ordway, Jordan E. Vellky, Mark Rebeiz, and Thomas M. Williams

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Drosophila Eye Model to Study Neuroprotective Role of CREB Binding Protein (CBP) in Alzheimer’s Disease, Timothy Cutler, Ankita Sarkar, Michael Moran, Andrew Steffensmeier, Oorvashi Roy Puli, Greg Mancini, and Meghana Tare

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The Future of Carbon-Based Scaffolds in Foot and Ankle Surgery, Jarema S. Czarnecki, Khalid Lafdi, and Panagiotis A. Tsonis

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Precision-Engineering the Pseudomonas aeruginosa Genome with Two-Step Allelic Exchange, Laura R. Hmelo, Bradley R. Borlee, Henrik Almblad, Michelle E. Love, Trevor E. Randall, Boo Shan Tseng, Chuyang Lin, Yasuhiko Irie, Kelly M. Storek, Jaeun Jane Yang, Richard J. Siehnel, P. Lynne Howell, Pradeep K. Singh, Tim Tolker-Nielsen, Matthew R. Parsek, Herbert P. Schweizer, and Joe J. Harrison

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Genetic Changes to a Transcriptional Silencer Element Confers Phenotypic Diversity within and between Drosophila Species, Winslow C. Johnson, Alison J. Ordway, Masayoshi Watada, Jonathan N. Pruitt, Thomas M. Williams, and Mark Rebeiz

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Beyond Bivariate Correlations: Three-block Partial Least Squares Illustrated with Vegetation, Soil, and Topography, Daehyun Kim, Thomas J. DeWitt, César S. B. Costa, John A. Kupfer, Ryan W. McEwan, and J. Anthony Stallins

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Drosophila C-Terminal Src Kinase Regulates Growth via the Hippo Signaling Pathway, Hailey J. Kwon, Indrayani Waghmare, Shilpi Verghese, Aditi Singh, Amit Singh, and Madhuri Kango-Singh

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The cabABC Operon Essential for Biofilm and Rugose Colony Development in Vibrio vulnificus, Jin Hwan Park, Youmi Jo, Song Yee Jang, Haenaem Kwon, Yasuhiko Irie, Matthew R. Parsek, Myung Hee Kim, and Sang Ho Choi

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The Hippo Pathway Effector Yki Downregulates Wg Signaling to promote Retinal Differentiation in the Drosophila Eye, Erika Lynn Wittkorn, Ankita Sarkar, Kristine Garcia, Madhuri Kango-Singh, and Amit Singh

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Cell Type-Specific Responses to Wingless, Hedgehog and Decapentaplegic Are Essential for Patterning Early Eye-Antenna Disc in Drosophila, Jong-Hoon Won, Orkhon Tsogtbartarr, Wonseok Son, Amit Singh, Kwang-Wook Choi, and Kyung-Ok Cho

Submissions from 2014

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Single-Cell Control of Initial Spatial Structure in Biofilm Development Using Laser Trapping, Jaime B. Hutchison, Chris Rodesney, Karishma S. Kaushik, Henry H. Le, Daniel A. Hurwitz, Yasuhiko Irie, and Vernita Gordon

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LC/MS/MS-Based Quantitative Assay for the Secondary Messenger Molecule, c-di-GMP, Yasuhiko Irie and Matthew R. Parsek

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ChIP-Seq and RNA-Seq Reveal an AmrZ-Mediated Mechanism for Cyclic di-GMP Synthesis and Biofilm Development by Pseudomonas aeruginosa, Christopher J. Jones, David Newsom, Benjamin Kelly, Yasuhiko Irie, Laura K. Jennings, Binjie Xu, Dominique H. Limoli, Joe J. Harrison, Matthew R. Parsek, Peter White, and Daniel J. Wozniak

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A Vertex Specific Dorsal Selector dve Represses the Ventral Appendage Identity in Drosophila Head, Naruto Kiritooshi, Takeshi Yorimitsu, Tetsuya Shirai, Oorvashi Roy Puli, Amit Singh, and Hideki Nakagoshi

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The Expansion of Body Coloration Involves Coordinated Evolution in cis and trans within the Pigmentation Regulatory Network of Drosophila prostipennis, Alison J. Ordway, Kerry N. Hancuch, Winslow C. Johnson, Thomas M. Williams, and Mark Rebeiz

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A Survey of the Trans-regulatory Landscape for Drosophila Melanogaster Abdominal Pigmentation, William A. Rogers, Sumant Grover, Samantha J. Stringer, Jennifer Parks, Mark Rebeiz, and Thomas M. Williams

Submissions from 2013

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Homeotic Gene Teashirt (tsh) Has a Neuroprotective Function in Amyloid-Beta 42 Mediated Neurodegeneration, Michael T. Moran, Meghana Tare, Madhuri Kango-Singh, and Amit Singh

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Recurrent Modification of a Conserved Cis-Regulatory Element Underlies Fruit Fly Pigmentation Diversity, William A. Rogers, Joseph R. Salomone, David J. Tacy, Eric M. Camino, Kristen A. Davis, Mark Rebeiz, and Thomas M. Williams

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The Evolution of Bab Paralog Expression and Abdominal Pigmentation among Sophophora Fruit Fly Species, Joseph R. Salomone, William A. Rogers, Mark Rebeiz, and Thomas M. Williams

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Molecular Genetics of Axial Patterning, Growth and Disease in the Drosophila Eye, Amit Singh and Madhuri Kango-Singh

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A Microarray Analysis of Gene Expression Patterns During Early Phases of Newt Lens Regeneration, Konstantinos Sousounis, Christian S. Michel, Marc Bruckskotten, Nobuyasu Maki, Thilo Borchardt, Thomas Braun, Mario Looso, and Panagiotis A. Tsonis

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Novel Neuroprotective Function of Apical-Basal Polarity GeneCrumbs in Amyloid Beta 42 (Aβ42) Mediated Neurodegeneration, Andrew Steffensmeier, Meghana Tare, Oorvashi Roy Puli, Rohan Modi, Jaison Nainaparampil, Madhuri Kango-Singh, and Amit Singh

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Domain Specific Genetic Mosaic System in the Drosophila Eye, Meghana Tare, Oorvashi Roy Puli, Michael Moran, Madhuri Kango-Singh, and Amit Singh

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Molecular Genetic Mechanisms of Axial Patterning: Mechanistic Insights into Generation of Axes in the Developing Eye, Meghana Tare, Oorvashi Roy Puli, and Amit Singh

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Salamander Hox Clusters Contain Repetitive DNA and Expanded Non-Coding Regions: A Typical Hox Structure for Non-Mammalian Tetrapod Vertebrates?, Stephen Randal Voss, Srikrishna Putta, John A. Walker, Jeremiah J. Smith, Nobuyasu Maki, and Panagiotis A. Tsonis

Submissions from 2012

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Annual Drosophila Research Conference, 2012, Gerald B. Call, Oorvashi Roy Puli, Anna M. James, Christopher R. Pope, Madhuri Kango-Singh, and Amit Singh

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The Pel and Psl Polysaccharides provide Pseudomonas aeruginosa Structural Redundancy within the Biofilm Matrix, Kelly M. Colvin, Yasuhiko Irie, Catherine S. Tart, Rodolfo Urbano, John C. Whitney, Cynthia Ryder, P. Lynne Howell, Daniel J. Wozniak, and Matthew R. Parsek

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Hybrid Carbon-Based Scaffolds for Applications in Soft Tissue Reconstruction, Jarema S. Czarnecki, Khalid Lafdi, Robert M. Joseph, and Panagiotis A. Tsonis

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Resolution of Sweet Flag Species Identity Provides Basis for Managing Contrasting Impacts of Native and Introduced Sweet Flag in North American Ecosystems, Donald R. Geiger and Michele G. Banker

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Implication of the miR-184 and miR-204 Competitive RNA Network in Control of Mouse Secondary Cataract, Andrea Hoffmann, Yusen Huang, Rinako Suetsugu-Maki, Carol S. Ringelberg, Craig R. Tomlinson, Katia Del Rio-Tsonis, and Panagiotis A. Tsonis

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Self-Produced Exopolysaccharide is a Signal that Stimulates Biofilm Formation in Pseudomonas aeruginosa, Yasuhiko Irie, Bradley R. Borlee, Jennifer R. O’Connor, Preston J. Hill, Caroline S. Harwood, Daniel J. Wozniak, and Matthew R. Parsek

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Fluorescence-Based Reporter for Gauging Cyclic Di-GMP Levels in Pseudomonas aeruginosa, Morten T. Rybtke, Bradley R. Borlee, Keiji Murakami, Yasuhiko Irie, Morten Hentzer, Thomas E. Nielsen, Michael Givskov, Matthew R. Parsek, and Tim Tolker-Nielsen

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The Cell Division Gene Ftsz2 of Sinorhizobium Meliloti is Expressed At High Levels in Host Plant Medicago Truncatula Nodules in the Absence of Sini, Muhamad Ali K. Shakhatreh and Jayne B. Robinson

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Neurodegeneration - A Means to an End, Amit Singh

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Drosophila as a Model for Understanding Development and Disease, Amit Singh and Kenneth D. Irvine

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A Glimpse into Dorso-Ventral Patterning of the Drosophila Eye, Amit Singh, Meghana Tare, Oorvashi Roy Puli, and Madhuri Kango-Singh

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Conservation of the Three-Dimensional Structure in Non-Homologous Or Unrelated Proteins, Konstantinos Sousounis, Carl E. Haney, Jin Cao, Bharath Sunchu, and Panagiotis A. Tsonis

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Patterns of Gene Expression in Microarrays and Expressed Sequence Tags from Normal and Cataractous Lenses, Konstantinos Sousounis and Panagiotis A. Tsonis

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Lens Regeneration in Axolotl: New Evidence of Developmental Plasticity, Rinako Suetsugu-Maki, Nobuyasu Maki, Saulius Sumanas, Jie Zhu, Katia Del Rio-Tsonis, and Panagiotis A. Tsonis

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Scribble Acts in the Drosophila Fat-Hippo Pathway to Regulate Warts Activity, Shilpi Verghese, Indrayani Waghmare, Hailey Kwon, Katelin Hanes, and Madhuri Kango-Singh

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Detection of Mycobacterium Ulcerans in the Environment Predicts Prevalence of Buruli Ulcer in Benin, Heather R. Williamson, Mark Eric Benbow, Lindsay P. Cambell, Christian R. Johnson, Ghislain Sopoh, Yves Barogui, Richard W. Merritt, and Pamela L. C. Small

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Electrochemical Characterization of the Shell of the Eastern Oyster, Crassostrea Virginica, Yuhchae Yoon, Andrew S. Mount, Karolyn Hansen, and Douglas C. Hansen

Submissions from 2011

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Annual Drosophila Research Conference, 2011, Gerald B. Call, Shilpi Verghese, Oorvashi Roy Puli, Dawn M. Hemmerle, Madhuri Kango-Singh, and Amit Singh

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Design of a Factorial Experiment with Randomization Restrictions to Assess Medical Device Performance on Vascular Tissue, Wiebke Diestelkamp, Carissa M. Krane, and Margaret Pinnell

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Mechanical Test Methods for Assessing Porcine Carotid and Uterine Artery Burst Pressure Following Ex Vivo Ultrasonic Ligature Seal and Transection, Carissa M. Krane, Margaret Pinnell, Courtney Gardner, Mercedes Thompson, James Coleman, and Robert Wilkens

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Flowering Phenology Change and Climate Warming in Southwestern Ohio, Ryan McEwan, Robert J. Brecha, Donald R. Geiger, and Grace P. John

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The Cellular Model of Eastern Oyster (Grassostrea Virginica) Shell Formation, Andrew S. Mount, Neeraj V. Gohad, Karolyn Hansen, Mary Beth Johnstone, and Douglas C. Hansen

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Dynamic Regulation of Aquaglyceroporin Expression in Erythrocyte Cultures from Cold- and Warm-Acclimated Cope's Gray Treefrog, Hyla Chrysoscelis, Venkateshwar Mutyam, Matthew V. Puccetti, James Frisbie, David L. Goldstein, and Carissa M. Krane

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Endo-Porter–Mediated Delivery of Phosphorodiamidate Morpholino Oligos (PMOs) in Erythrocyte Suspension Cultures from Cope's Gray Treefrog Hyla Chrysoscelis, Venkateshwar Mutyam, Matthew V. Puccetti, James Frisbie, David L. Goldstein, and Carissa M. Krane

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Protein Trap Lines of Drosophila to demonstrate Spatio-Temporal Localization of Proteins in an Undergraduate Lab, Oorvashi Roy Puli and Amit Singh

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Experimental Approaches to Evaluate the Contributions of Candidate Cis-regulatory Mutations to Phenotypic Evolution, Mark Rebeiz and Thomas M. Williams

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Quantitative Comparison of cis-Regulatory Element (CRE) Activities in Transgenic Drosophila melanogaster, William A. Rogers and Thomas M. Williams

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Opposing Interactions between Homothorax and Lobe define the Ventral Eye Margin of Drosophila Eye, Amit Singh, Meghana Tare, Madhuri Kango-Singh, Won-Seok Son, Kyung-Ok Cho, and Kwang-Wook Choi

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A Complement Receptor C5a Antagonist Regulates Epithelial to Mesenchymal Transition and Crystallin Expression After Lens Cataract Surgery in Mice, Rinako Suetsugu-Maki, Nobuyasu Maki, Timothy P. Fox, Kenta Nakamura, Richard Cowper.Solari, Craig R. Tomlinson, Hongchang Qu, John D. Lambris, and Panagiotis A. Tsonis

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Activation of JNK Signaling Mediates Amyloid-ß- Dependent Cell Death, Meghana Tare, Rohan Modi, Jaison Nainaparampil, Oorvashi Roy Puli, Shimpi Bedi, Pedro Fernandez-Funez, Madhuri Kango-Singh, and Amit Singh

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The Role of Crassostrea Virginica Hemocytes in Shell Formation: Ex Vivo Mineral Deposition by Cultured Hemocytes, Emily A. Untener, Douglas C. Hansen, and Karolyn Hansen

Submissions from 2010

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Annual Drosophila Research Conference, 2010, Gerald B. Call, Oorvashi Roy Puli, Shilpi Verghese, and Amit Singh

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A Major Role for Mammals in the Ecology of Mycobacterium Ulcerans, Janet A. Fyfe, Caroline J. Lavender, Kathrine A. Handasyde, Alistair R. Legione, Carolyn R. O'Brien, Timothy P. Stinear, Sacha J. Pidot, Torsten Seemann, Mark Eric Benbow, John R. Wallace, Christina McCowan, and Paul D. R. Johnson

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Glycerol Uptake by Erythrocytes from Warm- and Cold-Acclimated Cope’s Gray Treefrogs, David L. Goldstein, James Frisbie, Andrew Diller, Ram Naresh Pandey, and Carissa M. Krane

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Pseudomonas aeruginosa Biofilm Matrix Polysaccharide Psl is Regulated Transcriptionally by RpoS and Post-Transcriptionally by RsmA, Yasuhiko Irie, Melissa Starkey, Adrianne N. Edwards, Daniel J. Wozniak, Tony Romeo, and Matthew R. Parsek

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Expression Profiles During Dedifferentiation in Newt Lens Regeneration Revealed by Expressed Sequence Tags, Nobuyasu Maki, John Martinsou, Osamu Nishimura, Hiroshi Tarui, Jaroslaw Meller, Panagiotis A. Tsonis, and Kiyokazu Agata

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Ecology and Transmission of Buruli Ulcer Disease: A Systematic Review, Richard W. Merritt, Edward D. Walker, Pamela L. C. Small, John R. Wallace, Paul D. R. Johnson, Mark Eric Benbow, and Daniel A. Boakye

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Tubulin Evolution in Insects: Gene Duplication and Subfunctionalization Provide Specialized Isoforms in a Functionally Constrained Gene Family, Mark G. Nielsen, Sudhindra R. Gadagkar, and Lisa Gutzwiller

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Dorsal Eye Selector Pannier (pnr) Suppresses the Eye Fate to Define Dorsal Margin of the Drosophila Eye, Sarah M. Oros, Meghana Tare, Madhuri Kango-Singh, and Amit Singh

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Different Methods for Culturing Biofilms In Vitro, S. Brook Peterson, Yasuhiko Irie, Bradley R. Borlee, Keiji Murakami, Joe J. Harrison, Kelly M. Colvin, and Matthew R. Parsek

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A Molecular Screening Method for Unisexual Ambystoma using Mitochondrial DNA, Elizabeth A. Rhoads, Carissa M. Krane, and P. Kelly Williams

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Focus on Molecules: Six3 – Master or Apprentice?, Amit Singh and Panagiotis A. Tsonis

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Generation of a Novel Wing Colour Pattern by the Wingless Morphogen, Thomas Werner, Shigeyuki Koshikawa, Thomas M. Williams, and Sean B. Carroll

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Adapting Biodegradable Oligo(Poly(Ethylene Glycol) Fumarate) Hydrogels for Pigment Epithelial Cell Encapsulation and Lens Regeneration, Mimi W. Zhang, Hansoo Park, Xuan Guo, Kenta Nakamura, Robert M. Raphael, F. Kurtis Kasper, Antonios G. Mikos, and Panagiotis A. Tsonis

Submissions from 2009

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Towards Biomimetic Ceramic Coatings: Cellular Aspects of Oyster Shell Biomineralization, Mary Beth Johnstone, Karolyn Hansen, Neeraj V. Gohad, Douglas C. Hansen, and Andrew S. Mount

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Regulation of Organ Size: Insights from the Drosophila Hippo Signaling Pathway, Madhuri Kango-Singh and Amit Singh

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Altered Regulation of Aquaporin Gene Expression in Allergen and IL-13-Induced Mouse Models of Asthma, Carissa M. Krane, Bijia Deng, Venkateshwar Mutyam, Casey A. McDonald, Stephen Pazdziorko, Lawrence Mason, Samuel Goldman, Marion Kasaian, Divya Chaudhary, Cara Williams, and Melisa W.Y. Ho

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The Mineralization Front of the Eastern Oyster is Cellular, Andrew S. Mount, Neeraj V. Gohad, Mary Beth Johnstone, Karolyn Hansen, and Douglas C. Hansen

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Rapid Evolution of Sex-Pheromone-producing Enzyme in Drosophila, Troy R. Shirangi, Héloïse D. Dufour, Thomas M. Williams, and Sean B. Carroll

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Patterning Defects in Silkworm Embryos Analysed through Cuticle Preparations, Amit Singh, Madhuri Kango-Singh, and K. P. Gopinathan

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Drosophila Adult Eye Model to Teach Scanning Electron Microscopy in an Undergraduate Cell Biology Laboratory, Meghana Tare, Oorvashi Roy Puli, Sarah M. Oros, and Amit Singh

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Genetic and Molecular Insights into the Development and Evolution of Sexual Dimorphism, Thomas M. Williams and Sean B. Carroll

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Assessment of Oyster Shell Structural Properties for the Development of 'Green' Composite Materials, Yuhchae Yoon, Andrew S. Mount, Douglas C. Hansen, and Karolyn Hansen

Submissions from 2008

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A Novel Approach to Control Growth, Orientation, and Shape of Human Osteoblasts, Jarema S. Czarnecki, Khalid Lafdi, and Panagiotis A. Tsonis

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Quorum Sensing and Microbial Biofilms, Yasuhiko Irie and Matthew R. Parsek

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Annual Drosophila Research Conference, 2008, Madhuri Kango-Singh, Gerald B. Call, and Amit Singh

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A Cell Biology Laboratory Exercise to Study Sub-Cellular Organelles in Drosophila, Meghana Tare and Amit Singh

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The Regulation and Evolution of a Genetic Switch Controlling Sexually Dimorphic Traits in Drosophila, Thomas M. Williams, Jane E. Selegue, Thomas Werner, Nicolas Gompel, Artyom Kopp, and Sean B. Carroll

Submissions from 2007

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In vivo Colonization Profile Study of Bordetella bronchiseptica in the Nasal Cavity, Yasuhiko Irie and Ming H. Yuk

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Comparative Functional Analysis of Aquaporins/Glyceroporins in Mammals and Anurans, Carissa M. Krane and David L. Goldstein

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Drosophila TRAP230/240 are Essential Coactivators for Atonal in Retinal Neurogenesis, Janghoo Lim, Ok-Kyung Lee, Ya-Chieh Hsu, Amit Singh, and Kwang-Wook Choi

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Regeneration of Retinotectal Projections After Optic Tectum Removal in Adult Newts, Mitsumasa Okamoto, Hatsuki Ohsawa, Toshinori Hayashi, Katsushi Owaribe, and Panagiotis A. Tsonis

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Larval Legs of Mulberry Silkworm Bombyx mori are Prototypes for the Adult Legs, Amit Singh, Madhuri Kango-Singh, R. Parthasarathy, and K. P. Gopinathan

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Excretion and Conservation of Glycerol, and Expression of Aquaporins and Glyceroporins, During Cold Acclimation in Cope's Gray Tree Frog Hyla Chrysoscelis, Sarah L. Zimmerman, James Frisbie, David L. Goldstein, Jennifer West, Kevin Rivera, and Carissa M. Krane

Submissions from 2006

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Expression of the Primary Carbohydrate Component of the Bordetella bronchiseptica Biofilm Matrix Is Dependent on Growth Phase but Independent of Bvg Regulation, Yasuhiko Irie, Andrew Preston, and Ming H. Yuk

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Annual Drosophila Research Conference, 2006, Madhuri Kango-Singh and Amit Singh

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Identification of MicroRNAs and Other Small RNAs from the Adult Newt Eye, Evgeny Makarev, Jason R. Spence, Katia Del Rio-Tsonis, and Panagiotis A. Tsonis

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Gene Expression and Discovery During Lens Regeneration in Mouse: Regulation of Epithelial to Mesenchymal Transition and Lens Differentiation, Mario Medvedovic, Craig R. Tomlinson, Mindy Kay Call, Matthew Grogg, and Panagiotis A. Tsonis

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Repeated Morphological Evolution through cis-Regulatory Changes in a Pleiotropic Gene, Benjamin Prud'homme, Nicolas Gompel, Antonis Rokas, Victoria A. Kassner, Thomas M. Williams, Shu-Dan Yeh, John R. True, and Sean B. Carroll

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Eye Development at the Houston "Fly Meeting", Amit Singh

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Lobe and Serrate are Required for Cell Survival during Early Eye Development in Drosophila, Amit Singh, Xiao Shi, and Kwang-Wook Choi